Hi Debora, There isn't a tool to do this on the public Main Galaxy server at http://usegalaxy.org. But I did just create a ticket to have a wrapped tool in the Tool Shed added to Main for this function. You can "up-vote" to help it become prioritized, and also comment if you have a preference between the choices listed in the description or want to suggest an alternate: https://trello.com/c/z0MLCQHU https://wiki.galaxyproject.org/Issues The Tool Shed's repository "wgsim" could likely be run in a local Galaxy with modest resources without too much trouble. If you want to try, this is how to get started. The repository "grinder" I believe is more compute intensive, but you could test this. Moving to a cloud would work for both. http://getgalaxy.org http://usegalaxy.org/toolshed http://usegalaxy.org/cloud And, one final option is to locate a public Galaxy server that hosts a tool for this function. I don't know of one off hand, but the list of servers is here: https://wiki.galaxyproject.org/PublicGalaxyServers Thanks! Jen Galaxy team On 2/20/14 4:30 AM, garzetti wrote:
Dear all,
I would like to perforn my SNP calling pipeline (for MySeq Illumina reads) to previously sequenced and assembled genomes. Is there any read simulator in the Main Galaxy? I am looking for something like the wgsim algorithm in SAMtools...
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