Hi guys,

We are trying to load Illumina data to our local Galaxy instance. The files are between 700 MB and 2.2 GB. Files below 2 GB load in less than 5 minutes. Files larger than 2 GB don't upload at all. We installed Galaxy locally because we thought loading files will be faster than the server version. Any suggestions to solve this problem is highly appreciated.

Tilahun
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John David Osborne wrote:
I noticed that for our new Ilumina data (which generate Sanger format) the FastQ groomer output is identical to the Ilumina FastQ input file.
 
I was hoping to go ahead and just use the raw FastQ files as input (saving disk space) for computing quality statistics to look at box plots, but it appears that the tool "Compute Quality Statistics" appears to require that the data have been run through FastQ Groomer first.
 
Is there a way to get around this and is this a bug? I assuming this is some sort of safety measure built into this tool?
 
 -John
 

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