Hi, yes, you can link files to a Galaxy Library without copying - please see https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles(the last part 'Upload files from filesystem paths'). And there is an API for libraries (although it is under construction). The flow of controllers for upload is api/library_contents > controllers/library_common https://galaxy-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.a... Martin On Tue, Mar 25, 2014 at 7:47 AM, do kadya <dokadya@gmail.com> wrote:
Hi, Can I upload data (mostly link the data) using terminal ?
MuSiC 2 tool integration is not available in their website nor in tool shed. MuSiC 2 creates folder and files by itself, which is hard to track by Galaxy.
So is there any way to link files to galaxy current work space so that I can link those distracted files which are created by MuSiC 2.
ex: if you run music2 bmr calc-bmr file_of_input
output is 3 files, ./file1.txt ./folder1/file2.txt ./folder2/file3.txt we can not mention that we need this output filename or save file at specific location, we can not give this option.
Galaxy will not able to track this output, hence i have to do it manually. So is it possible to upload this files manually by terminal ?
Waiting for positive reply. Thank You - Chetan
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