Hi Nate, Good to know, thanks for the info! Pi On 13•Jul•2009, at 3:18 PM, Nate Coraor wrote:
Hi Pieter,
Mercurial uses these changeset ID strings since changeset numbers can vary from repository to repository (depending on any local commits). Without having an actual clone of the repo and the 'hg' commandline tool, the best option is to use the hgweb url, like so:
http://www.bx.psu.edu/hg/galaxy/rev/3bbb2d2caa5f
From this page, you can see that you have changeset 2465.
Pieter Neerincx wrote:
Hi Greg, Thanks for the fixes! This results in one more question though: how do I know what version of Galaxy I have? When I download tarballs, I get folders starting with "galaxy-" followed by what appears to be a random string like for example 3bbb2d2caa5f. That string is of the "node" mentioned in .hg_archival.txt, but how do I map that to a changeset number? There is a Revision file, but as far as I can tell that is related to SVN and outdated as Galaxy switched to mercurial. Would it be possible to replace those random strings in the foldernames to change set numbers in the future? Cheers, Pi On 7•Jul•2009, at 10:04 PM, Greg Von Kuster wrote:
Hello Pieter,
I'm not sure when the tarball is updated, but I believe it is nightly - I'll let Nate confirm.
The dataset security features are fairly new, and we're still working out a few remaining issues. This is yet another bug that you've uncovered, and it has been fixed in change set 2465, which is available for download.
Roles that are named the same as a user's Galaxy account ( their email ) are "private" roles associated with the user. There is a 1 to 1 mapping between a user and a private role, and user A should not be permitted to be associated with user B's private role. Also, it should not be possible for a user to be dis- associated with their private role. Both of these issues have been corrected in the change set. In addition, yet another bug was corrected, where a user's private role could be associated more than 1 time with the same user.
Thanks very much for reporting these issues.
Greg Von Kuster Galaxy development Team
Pieter Neerincx wrote:
Hi Nate,
Thanks! It's more clear now. I've enabled the account in MySQL and it works fine again. Still I'm a bit puzzled though by how the assignment of roles works. I can not remove a role. If I remove a role and click save the changes won't stick... and the number for roles in the overview is incremented with every unsuccessful un- assignment...
I don't have mercurial, so I fetched a gzipped tarball. It does not seem to have a version number. Therefore I was wondering how often are these updated? Does that happen with a cron job overnight or just once every while?...
Thanks,
Pi
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------------------------------------------------------------- Biomolecular Mass Spectrometry and Proteomics Utrecht University Visiting address: H.R. Kruyt building room O607 Padualaan 8 3584 CH Utrecht The Netherlands Mail address: P.O. box 80.082 3508 TB Utrecht The Netherlands phone: +31 (0)6-143 66 783 email: pieter.neerincx@gmail.com skype: pieter.online ------------------------------------------------------------