Hi guys,

I am trying to examine gene differential expression in my mouse samples using :

Cufflink >> Cuffmerge>>Cuffdiff

The output from Cuffdiff shows only gene id, but not gene name:

test_id

gene_id

gene

locus

sample_1

sample_2

XLOC_000001

1:3200263-3200566

Epithelium

Fiber

Could anyone tell me how to make the gene name show up?

I used Mus_musculus.GRCm38.71.dna.toplevel.fa as the reference sequence (not GRCm38/mm10 from UCSC table broswer because i think this may be old version).

I have been trying to find a solution online but still very confused

Thanks so much

Thanh