On Nov 16, 2012, at 12:22 PM, greg wrote:
I guess I'm still confused about new_file_path.
The upload tool uses that directory to store files temporariliy until the upload completes? And then moves it? (Will it clean up anything placed in the new_file_path directory?)
Yes, the parameters of the upload tool are written to a temp file in this directory. It is cleaned up upon completion. A lot of other things use new_file_path, and not all of them clean themselves up, so it's a good idea to use an automated process to clean the directory. --nate
Thanks,
Greg
On Fri, Nov 16, 2012 at 10:56 AM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 10:41 AM, greg wrote:
On Fri, Nov 16, 2012 at 10:00 AM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 9:14 AM, greg wrote:
Are you running the upload tool on a cluster?
--nate
Well I have Galaxy set up to send it's jobs to SGE/qsub but I haven't verified that it's doing that yet. I wanted to upload a file to test on first.
Here are the changes I made to universe_wsgi.ini after copying the sample:
#upload1 = local:///
I'm guessing that it's working, you can verify by having a look in your Galaxy server output/log file. new_file_path will need to be set to something that is accessible on the cluster.
--nate
-Greg