FYI, I've gotten the same error recently when trying to run Bowtie (using Galaxy Main).

Jeremy

On Tue, May 1, 2012 at 4:37 PM, Richard Mark White <whiter3@yahoo.com> wrote:

Hi,
Ive been trying to run cufflinks/cuffdiff but keep getting this error: Job output not returned by PBS: the output datasets were deleted while the job was running, the job was manually dequeued or there was a cluster error.

is there a system issue or something with my data?

r

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