Hi,

we are currently working on one pipeline. I can share if you are interested, but its not yet finished, parameter wise, but all tools should be there.

We tried to stick to the GATK2 best-practise guide and are using snpeff for annotation.

Cheers,
Bjoern

Am 15.03.2014 01:55, schrieb Mathew Bunj:

No I have not received any feedback as yet.

Thanks



On Friday, March 14, 2014 7:42 AM, Kristin Kernohan <kristinkernohan@gmail.com> wrote:

Hi

did anyone answer this? Id be curious to know as well

thanks

Kristin



On Thu, Mar 13, 2014 at 10:22 PM, Mathew Bunj <mathewbunj@yahoo.com> wrote:

I was wondering if Galaxy has any work flow for calling mutations in Exome seq and then annotating. Alignment can be done by BWA.

Thanks


Mathew
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
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using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
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