Kathryn, Are you using the galaxy cloud configuration provided by the team, or have you installed your own galaxy on a cloud instance? It sounds like the latter, in which case you'll need to configure reference as detailed here: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup. You may also want to experiment with using the preconfigured cloud instances, see this page for more information on those: http://wiki.galaxyproject.org/CloudMan -Dannon On Dec 18, 2012, at 2:21 PM, "Sun, Wenping [USA]" <Sun_Wenping@bah.com> wrote:
Dear Galaxy members,
I am new to galaxy and just installed galaxy on aws cloud. I am testing how it works and have the following question below:
1. I tried to test bowtie2 with the dataset I uploaded, however, the window for reference genome is very narrow and nothing from pull-down menu can be selected. When I omit that option to execute bowtie2, galaxy give error message for requesting reference genome. I am using hg19, should I upload myself? If so, how? 2. Same error happen for me to run fastqc --- the reference genome selection window is way too narrow and nothing can be selected
Thank you very much for your inputs and helps! Kind regards, Kathryn
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