Hi,

I'd like to consider local install (linux) of Galaxy (pre-built binary or build from source). I was warned that analysis using Galaxy requires huge amount of memory (tens-Gb or even hundreds). I'm sure it's problem dependent though. For now I intend to do analysis vis-a-vis an archaeal genome, which is not too large. Is that practical to try to approach the problem on a recently purchased Quad-core computer with 8Gb memory or should I stick with the public implementation?

I'd appreciate your advice.

Boaz

Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel

E-mail: bshaanan@bgu.ac.il
Phone: 972-8-647-2220  Skype: boaz.shaanan
Fax:   972-8-647-2992 or 972-8-646-1710

From: galaxy-user-bounces@lists.bx.psu.edu [galaxy-user-bounces@lists.bx.psu.edu] on behalf of Dave Clements [clements@galaxyproject.org]
Sent: Tuesday, June 04, 2013 12:35 AM
To: Ramon Felciano
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Newbie: summary or metrics of Galaxy use & adoption?

Hi Ramon,

The Galaxy Project does not track local installs directly. We don't even keep track of the number of times it is downloaded.

However, you can get an approximate feel for how widely used it is in a couple of other ways:

Galaxy-Dev mailing list traffic and membership. Most messages to this list come from people doing local installs of Galaxy. There are a lot of messages. http://wiki.galaxyproject.org/Galaxy%20Project/Statistics#Mailing_Lists
Source code contributions from the community. See https://www.ohloh.net/p/galaxybx/
The public Galaxy server list at http://wiki.galaxyproject.org/PublicGalaxyServers. These are all local installs (and this number may go up again this week).
The isgalaxy tag in Galaxy's CiteUlike group. These papers are about installations of Galaxy. http://www.citeulike.org/group/16008/tag/isgalaxy
The uselocal, usepublic, and uselocal tags at CiteULike. We started keeping track of these in March 2013. So this will give you an idea of how many papers since March indicate that the used a Galaxy other than Main.

We will be updating most of our statistics at the end of this month. We'll also be back-curating the new citeulike tags back to the beginning of 2013.

Hope this helps.

Dave C

On Thu, May 30, 2013 at 11:15 AM, Ramon Felciano <felciano@ingenuity.com> wrote:

Hello all –

I would like to evaluate Galaxy for integration with Ingenuity’s NGS analytics platform, and am trying to pull together some macro materials on how Galaxy has been used and adopted by the community at large. Are there any presentations or wiki pages that summarize basic stuff like:

# users

# of deployments/ instances (public or private)

Relative use of CloudMan vs locally deployed

Use in any clinical or regulated environments (e.g. CLIA)

I’ve seen the materials at http://wiki.galaxyproject.org/Galaxy%20Project/Statistics but this looks to be only related to the public instance. Are there any similar materials that summarize across all installations, perhaps based on user surveys or the like?

Thanks in advance for your help.

Ramon

____________________________________

Ramon M. Felciano, PhD

Founder and SVP, Research

INGENUITY Systems, Inc.

1700 Seaport Blvd., 3rd Floor

Redwood City, CA 94063

650.381.5100 phone

650.963.3399 fax

E-mail: felciano@ingenuity.com

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