Hi Paul,
I’m happy to hear that so far you are happy with the data.
We used the Illumina TruSeq targeting kit, I made the exome target regions available as both a .bed and .gff file on the FTP.
Best regards
Jonas
Fra: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] På vegne af Guru Ananda
Sendt: 06 May 2011 16:47
Til: Peter Cock
Cc: galaxy-user@lists.bx.psu.edu
Emne: Re: [galaxy-user] Text Manipulation: Filter out duplicates (uniq) from an plain text file ?
Hi Peter and Roman,
The "Count" tool under "Statistics" section provides uniq-like functionality. If you run this tool by selecting all columns under "Count occurrences of values in column(s)" field, your output will contain one line per record, with the 1st column containing the number of occurrences of each record.
Hope this answers your question.
Thanks for using Galaxy,
Guru.
On Fri, May 6, 2011 at 10:22 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Fri, May 6, 2011 at 3:16 PM, Roman Valls <brainstorm@nopcode.org> wrote:
> Well, having similarly basic tools (in Galaxy) that can be performed on
> the commandline, such as "sort" or "cut" I just wondered how come a
> "uniq" is not there on the tool panel in some form/name.
>
> Thanks for the feedback Rory !
That's a timely question - I was also looking for something within Galaxy
to take a text file and remove duplicate lines.
Peter
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