Hi<div><br></div><div>I was wondering if there is a wrapper already for vcftools in Galaxy. I want to use the following functionalities of vcftools but I haven&#39;t found it in toolshed.</div><div><br></div><div>Thanks</div>
<div>Mahtab</div><div><br></div><div><br></div><div><span class="Apple-style-span" style="color:rgb(68,68,68);font-family:&#39;Lucida Sans Unicode&#39;,sans-serif;font-size:12px"><div class="item" style="margin-top:0px;margin-right:0px;margin-bottom:8px;margin-left:0px;padding-top:6px;padding-right:12px;padding-bottom:6px;padding-left:12px;border-top-width:1px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-top-style:solid;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-top-color:rgb(238,238,238);border-right-color:rgb(238,238,238);border-bottom-color:rgb(238,238,238);border-left-color:rgb(238,238,238);background-image:initial;background-color:rgb(255,255,255);background-repeat:initial initial">
<a name="compare" class="Q" style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;color:rgb(54,126,166);font-weight:bold">Comparing</a><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:1.2em;padding-left:0px">
</p><p class="codebox" style="margin-top:0px;margin-right:0px;margin-bottom:1.2em;margin-left:0px;padding-top:1px;padding-right:1px;padding-bottom:1px;padding-left:18px;background-image:initial;background-color:rgb(238,238,238);border-top-width:1px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-top-style:solid;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-top-color:rgb(221,221,221);border-right-color:rgb(221,221,221);border-bottom-color:rgb(221,221,221);border-left-color:rgb(221,221,221);background-repeat:initial initial">
<a href="http://vcftools.sourceforge.net/perl_module.html#vcf-compare" style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;color:rgb(51,102,204);text-decoration:none">vcf-compare</a> A.vcf.gz B.vcf.gz C.vcf.gz</p>
</div><div class="item" style="margin-top:0px;margin-right:0px;margin-bottom:8px;margin-left:0px;padding-top:6px;padding-right:12px;padding-bottom:6px;padding-left:12px;border-top-width:1px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-top-style:solid;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-top-color:rgb(238,238,238);border-right-color:rgb(238,238,238);border-bottom-color:rgb(238,238,238);border-left-color:rgb(238,238,238);background-image:initial;background-color:rgb(255,255,255);background-repeat:initial initial">
<a name="concat" class="Q" style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;color:rgb(54,126,166);font-weight:bold">Concatenating</a><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:1.2em;padding-left:0px">
</p><p class="codebox" style="margin-top:0px;margin-right:0px;margin-bottom:1.2em;margin-left:0px;padding-top:1px;padding-right:1px;padding-bottom:1px;padding-left:18px;background-image:initial;background-color:rgb(238,238,238);border-top-width:1px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-top-style:solid;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-top-color:rgb(221,221,221);border-right-color:rgb(221,221,221);border-bottom-color:rgb(221,221,221);border-left-color:rgb(221,221,221);background-repeat:initial initial">
<a href="http://vcftools.sourceforge.net/perl_module.html#vcf-concat" style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;color:rgb(51,102,204);text-decoration:none">vcf-concat</a> A.vcf.gz B.vcf.gz C.vcf.gz | bgzip -c &gt; out.vcf.gz</p>
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