I would like to use Galaxy to de-novo
assembly single-end read illumina data (140bp) for plant transcriptomes
(without reference). I remember early emails mention trinity in Galaxy.
But I could not see it at Galaxy web http://main.g2.bx.psu.edu/root. Maybe it is installed in Amarzon EC2? Other suggestions in de-novo assembly plant transcriptomes without reference.
Many thanks and look forward to hearing back from you, Baohua