Hi Erick- I'll try to keep the community posted on my progress, although that is likely to be unpredictable, just like my foreseeable development efforts. I'd like to hear from anyone that has incorporated a perl script into Galaxy and any advice they might have. Glen On Mar 30, 2010, at 2:46 AM, Erick Antezana wrote:
Hi Glen,
I am very interested in such a development. AFAIK, there isn't (yet) a Galaxy tool(s) that such pipeline. I am pretty sure this will be of great interest within the NGS/Galaxy community. Please keep us updated about its progress (maybe via the bitbucket wiki?).
cheers, Erick
On 30 March 2010 09:30, Glen Otero <gotero@linuxprophet.com> wrote:
Hello-
I'm about to embark on an effort to try and roll Illumina's CASAVA pipeline software--demultiplex.pl, GERALD.pl, run.pl and other scripts, into a local Galaxy install. I'd prefer not to reinvent the wheel, so I'd like to hear from anyone that's already done part or all of what I'm going to attempt. Any advice is greatly appreciated.
Alternatively, if this is something that other developers are interested in, maybe it could be considered for a coding sprint during the breakout session at the developers' conference or during one of the BEER sessions?
Thanks!
Glen
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