Brad,

We are looking for some advice on going from our current Galaxy to the nglims fork of Galaxy you have created.  The last post I've seen on the subject of moving to the nglims Galaxy was here:

Is it still the case that it "would best to first try it out on a separate instance before thinking about integrating with your production Galaxy. It does take a bit of tweaking …." ??

Second, when I install the nglims fork of galaxy is there a way to have galaxy use the tools  and genomes in bc-bio? On our original install, before we used bc-bio, I added tools mainly via the tool shed. It would be nice be to have galaxy using the same tools.

Any other advice would be greatly appreciated.

Thanks

Jim