Hello Jia-Xing, It might be a good idea to double check the file format and FTP transfer by reloading the data and running the tool again. Then, if the problem is persistent, please share a link to your history containing the original and new loaded data tool errors and we would be glad to examine and provide feedback. Use "Options -> Share or Publish" to generate a share link and email back directly to me. Hopefully we can resolve the issue quickly! Best, Jen Galaxy team On 5/26/11 7:50 AM, Jia-Xing Yue wrote:
Hi, when I converted the solid output to fastq, the galaxy always complained the following error. Does anybody know why>> ------------- An error occurred running this job:Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 207, in<module> main() File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 188, in main
Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 207, in
main() File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 188, in main merge_reads_qual( fr, fq, con, trim_name=options.trim_name, out='db', double_encode=options.de, trim_first_base=options.trim_first_base, min_qual=options.min_qual, table_name="f3" ) File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 83, in merge_reads_qual cursor.execute('insert into %s values("%s","%s","%s")' % (table_name, defline, lines[0], qual ) ) sqlite3.OperationalError: near "?3": syntax error
----------- Thanks!
Jia-Xing
-- Jia-Xing Yue
Graduate Student Ecology& Evolutionary Bio. -MS 170 Rice University 6100 Main Street Houston TX 77005
Phone: 1-832-360-6228 E-mail: yjx@rice.edu Blog: http://bestrok.blogspot.com/
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