Howdy, Brant, I'm at a conference this week and my internet connectivity is spotty. Short answer is "no", lastz doesn't provide a best-only filter. I am not sure what your input files are (one-to-one, many-to-many, one-to-many?). For one-to-one you could use sort and head to solve this (at command line-- not sure specifically how you would do this in galaxy). For many-to-one, such as mapping a large number of reads to a genome, it's a little more difficult because you want to sort to occur separately per read. It isn't an overly difficult thing to do though. ... laptop battery going down. Gotta sign off. Bob H
On Mar 25, 2010, at 12:28 PM, Anton Nekrutenko wrote:
Forwarding Bob Harris, the creator of lastz
Thanks - apparently, i didn't RTFM enough to see the lastz mailing list info right at the top of the README ; ).
best, b
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