Dinesh,<div><br></div><div>Please send questions such as these to the galaxy-user mailing list (which I&#39;ve cc&#39;d). You can find the &#39;Extract Genomic DNA&#39; tool under the &#39;Fetch Sequences&#39; menu. You may also want to use tool search (&#39;Options -&gt; Show Tool Search&#39;).</div>

<div><br></div><div>Thanks,</div><div>J.<br><br><div class="gmail_quote">On Wed, Mar 2, 2011 at 2:31 PM,  <span dir="ltr">&lt;<a href="mailto:dinesh@gwu.edu">dinesh@gwu.edu</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">

Hi Jeremy,<br>
You have asked to extract only the exons using the &#39;Extract Features&#39;<br>
tool but all I see here in my developer version under &#39;Extract Features&#39; is &#39;Gene BED To Exon/Intron/Codon BED expander&#39;. But the cufflinks files is a gtf file... I have tried to use the above tool but it returns an empty file. Do I need to convert my gtf to bed and then extract the exons and then use the &#39;Extract Genomic DNA&#39; tool?<br>


<br>
Thank You<br>
Dinesh Cyanam<br>
George Washington University<br><br></blockquote></div></div>