Dear galaxy user
After running cuffdiff on my two samples (SAM files from bowtie)
i got a list with p and q values, and löast colum is saying abou significance
with P value, it seems like the comparison should be significant, but in Q value is 1, and last coumn is saying not significant
any one have an idea, how to interpret it , should we take any comparsion with less than 0.05 p value as significant or not
tables in excel looks like it
Nay help is
welcome
best
Ateeq
| test_id |
gene_id |
gene |
locus |
sample_1 |
sample_2 |
status |
value_1 |
value_2 |
log2(fold_change) |
test_stat |
p_value |
q_value |
significant |
| CUFF.428.1 |
CUFF.428 |
- |
gi|190572091|ref|NC_010943.1|:1575813-1577629 |
q1 |
q2 |
NOTEST |
171.773 |
605.136 |
-150.518 |
588.996 |
3,86E-05 |
1 |
no |
| CUFF.462.1 |
CUFF.462 |
- |
gi|190572091|ref|NC_010943.1|:1680283-1681214 |
q1 |
q2 |
NOTEST |
696.628 |
322.149 |
-111.266 |
538.062 |
7,42E-03 |
1 |
no |
| CUFF.635.1 |
CUFF.635 |
- |
gi|190572091|ref|NC_010943.1|:2343969-2346219 |
q1 |
q2 |
NOTEST |
396.469 |
223.951 |
-0.824027 |
476.902 |
1,85E-01 |
1 |
no |
| CUFF.512.1 |
CUFF.512 |
- |
gi|190572091|ref|NC_010943.1|:1840464-1843486 |
q1 |
q2 |
NOTEST |
136.314 |
70.604 |
-0.949109 |
422.322 |
2,41E-01 |
1 |
no |
| CUFF.632.1 |
CUFF.632 |
- |
gi|190572091|ref|NC_010943.1|:2346561-2347408 |
q1 |
q2 |
NOTEST |
351.508 |
167.567 |
-106.882 |
415.844 |
3,20E-01 |
1 |
no |
| CUFF.941.1 |
CUFF.941 |
- |
gi|190572091|ref|NC_010943.1|:3664426-3665364 |
q1 |
q2 |
NOTEST |
282.247 |
133.798 |
-10.769 |
412.254 |
3,75E-01 |
1 |
no |
| CUFF.616.1 |
CUFF.616 |
- |
gi|190572091|ref|NC_010943.1|:2301552-2303180 |
q1 |
q2 |
NOTEST |
169.682 |
744.885 |
-118.774 |
462.107 |
3,82E-01 |
1 |
no |
| CUFF.617.1 |
CUFF.617 |
- |
gi|190572091|ref|NC_010943.1|:2295763-2297758 |
q1 |
q2 |
NOTEST |
225.933 |
112.178 |
-101.011 |
454.517 |
5,49E-01 |
1 |
no |
| CUFF.9.1 |
CUFF.9 |
- |
gi|190572091|ref|NC_010943.1|:41597-42402 |
q1 |
q2 |
OK |
1729.08 |
2797.07 |
0.693913 |
-4.461 |
8,16E-01 |
0.000179474 |
yes |
| CUFF.956.1 |
CUFF.956 |
- |
gi|190572091|ref|NC_010943.1|:3665445-3669232 |
q1 |
q2 |
NOTEST |
518.525 |
323.653 |
-0.679966 |
444.565 |
8,76E-01 |
1 |
no |
| CUFF.549.1 |
CUFF.549 |
- |
gi|190572091|ref|NC_010943.1|:2043111-2043664 |
q1 |
q2 |
OK |
7148.23 |
11816.4 |
0.725138 |
-421.443 |
2,50E+00 |
0.000275446 |
yes |
| CUFF.872.1 |
CUFF.872 |
- |
gi|190572091|ref|NC_010943.1|:3489557-3490326 |
q1 |
q2 |
NOTEST |
220.274 |
840.662 |
-13.897 |
416.179 |
3,16E+00 |
1 |
no |
| CUFF.636.1 |
CUFF.636 |
- |
gi|190572091|ref|NC_010943.1|:2348784-2352394 |
q1 |
q2 |
NOTEST |
114.384 |
601.415 |
-0.927447 |
414.807 |
3,35E+00 |
1 |
no |
| CUFF.605.1 |
CUFF.605 |
- |
gi|190572091|ref|NC_010943.1|:2271979-2275960 |
q1 |
q2 |
NOTEST |
217.007 |
133.837 |
-0.697264 |
409.373 |
4,24E+00 |
1 |
no |
| CUFF.568.1 |
CUFF.568 |
- |
gi|190572091|ref|NC_010943.1|:2160538-2164415 |
q1 |
q2 |
NOTEST |
74.365 |
377.013 |
-0.980011 |
395.097 |
7,78E+00 |
1 |
no |
| CUFF.597.1 |
CUFF.597 |
- |
gi|190572091|ref|NC_010943.1|:2250029-2250918 |
q1 |
q2 |
NOTEST |
229.389 |
105.246 |
-112.403 |
386.937 |
0.000109116 |
1 |
no |
Ateequr Rehman
House No. 2 ground floor
Blauenstr. 10
79115 Freiburg im Breisgau