You might want to ask about this on condor-users@cs.wisc.edu, if it is a Condor problem. (cc'd) On Tue, Oct 04, 2011 at 04:53:24PM -0500, Oren Livne wrote:
Dear All,
I am using Galaxy with condor as the scheduler via the DRMAA Job Runner. on Debian 6. Jobs are submitted to COndor but they are held because of permissions:
condor@vm-debian:~$ condor_q -analyze 10.0
-- Submitter: vm-debian.uchad.uchospitals.edu : <165.68.219.43:40312> : vm-debian.uchad.uchospitals.edu --- 010.000: Request is held.
Hold reason: Error from vm-debian.uchad.uchospitals.edu: Failed to open '/home/galaxy/galaxy-dist/database/pbs/19.o' as standard output: Permission denied (errno 13)
condor@vm-debian:~$ ls -l /home/galaxy/galaxy-dist/database/pbs/19.o -rw-r--r-- 1 galaxy galaxy 0 Oct 4 16:40 /home/galaxy/galaxy-dist/database/pbs/19.o
I am running galaxy as the galaxy user. I also have a condor user. How to ensure that jobs are submitted as the proper user?
Which user does condor believe you to be?
Thanks so much, Oren