We identified our local sequence file in tool-data/faseq.loc.  However, that file never shows up as an option under the "database/build" pulldown
(when we "pencil" edit a dataset). What additional configuration is necessary to have our local files show up in the database/build pulldowns?

regards,
David Goodstein
UCB Center for Integrative Genomics

On 24 Jun 2008, at 16:47, Rochak Neupane wrote:

---------- Forwarded message ----------
From: Greg Von Kuster <ghv2@psu.edu>
Date: Wed, Jun 18, 2008 at 1:06 PM
Subject: Re: [galaxy-user] local sequence storage
To: Rochak Neupane <rneupane@berkeley.edu>
Cc: galaxy-user@bx.psu.edu


Hello Rochak,

Yes, this is certainly possible.  The Galaxy distribution is
configured to look in the ~/tool-data directory for files which point
to your locally cached sequences.  See the "tool_data_path" setting in
the Galaxy config ( universe_wsgi.ini ).  This directory contains
sample ".loc.sample" files that are included in the distribution to
provide information about how to point the ".loc" versions of the same
files to your own locally cached sequences.  The comments at the
beginning of each of these files provides this information.

Greg Von Kuster
Galaxy Development Team


Rochak Neupane wrote:

Hello,

I recently started using galaxy. I installed a local copy of galaxy,  and am wondering how I can add our own sequences so that galaxy  understands them when fetching. So instead of fetching from PSU it'll  look at a local source. Is this doable? If so, how can I configure this?

Thanks,
Rochak
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