Hi Professor James Taylor, Good day. This issue is resolved thanks to your foresight. I forgot to give a dbkey to this one dataset and hence it failed to open. Everything is working fine now. Thanks so much once again, Varun ________________________________________ From: james@taylorlab.org [james@taylorlab.org] on behalf of James Taylor [james@jamestaylor.org] Sent: Friday, February 01, 2013 3:36 PM To: Kilaru, Varun Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Error using Trackster Okay. In Galaxy, what genome build (dbkey) is selected for the dataset? -- James Taylor, Assistant Professor, Biology/CS, Emory University On Fri, Feb 1, 2013 at 3:09 PM, Kilaru, Varun <vkilaru@emory.edu> wrote:
Hi Professor James Taylor,
Good day. Its a .wig file I downloaded from GEO. I tried to upload the zipped version to a previous mail but it is pending moderator approval. I downloaded the file from this link: http://www.ncbi.nlm.nih.gov/epigenomics/19516/ and did not make any changes to the file. Thanks a lot for helping me debug this.
Thanks so much, Varun ________________________________________ From: james@taylorlab.org [james@taylorlab.org] on behalf of James Taylor [james@jamestaylor.org] Sent: Friday, February 01, 2013 2:40 PM To: Kilaru, Varun Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Error using Trackster
What is the type of the file from GEO? Any additional information you provide will help debug this.
-- James Taylor, Assistant Professor, Biology/CS, Emory University
On Fri, Feb 1, 2013 at 1:53 PM, Kilaru, Varun <vkilaru@emory.edu> wrote:
Hi, Good day. I have been trying to use trackster on a file I downloaded from the NCBI GEO. However, it fails with the following error:
hashMustFindVal: 'chr11' not found grep: writing output: Broken pipe
This is followed by a number of lines of the same error code. I am not sure what is happening. Can you please elaborate?
Thanks, Varun
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