The genome "Mosquito (Aedes aegypti) (AaegL1)" is already included
in Galaxy as a native genome. To location the genome, type part of
the name, I used parts of both the common name "mos" and the
scientific name "aeg" and found the genome on the "Edit attributes"
page (pencil icon) and on tool forms (Bowtie, BWA, TopHat).
"AaegL1" is the latest "genome build". There are more recent "gene
builds", but these refer to annotation, not reference sequence. If
you wish to use the most current "gene build annotation"
information, this appears to be available through Biomart, which
means that the Galaxy "Get Data -> Biomart" tool can be used to
import the datasets directly for use with tools.
Hopefully this helps,
Jen
Galaxy team
On 7/2/12 7:53 AM, Laurence Després
wrote:
Dear Galaxy team,
I would like you to add in the insect genomes available in Galaxy
the genome of Aedes aegypti which is available in Vectorbase (http://aaegypti.vectorbase.org/),
Thank you,
Laurence Després
-- Laurence Després
Laurence
Després
Equipe Bases Génétiques de l’adaptation (GBA)
Laboratoire d'Ecologie Alpine (LECA)
UMR CNRS 5553
Université J. Fourier
Domaine universitaire de Saint Martin d'Hères
2233, rue de la piscine Bât. D BiologieBP
53, 38041 Grenoble Cedex 9, France laurence.despres@ujf-grenoble.fr
Tel: 33 (0)4 76 63 56 99
Fax: 33 (0)4 76 51 42 79 http://www2.ujf-grenoble.fr/leca/
Master2R Biodiversité-Ecologie-Environnement (BEE) http://www-biologie.ujf-grenoble.fr/SiteBio/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/