On Tue, Apr 24, 2012 at 11:08 PM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Thanks Peter,
Excellent point. From there, the "Cut" tool could be used to reorganize the output to exactly match that of the 13-column regular megablast output. So, no external data needed, no tool modifications needed.
This can't be done on the main public Galaxy instance as BLAST+ is not available there, but for any local/cloud instance this is an alternative certainly work testing.
Best,
Jen
I see Anton has just updated the Galaxy megablast tool to use BLAST+ internally now, getting blastn to produce the specific 13 columns desired. https://bitbucket.org/galaxy/galaxy-central/changeset/0b5cb60e4810 So once that change goes live it will probably resolve this issue. Peter