In the cufflink site, they have annotation from ucsc,ncbi & ensemble. not sure which one to download and then load into galaxy?

Sent from my iPhone

On Aug 30, 2011, at 5:52 PM, "vasu punj" <> wrote:

If using Ensembl make sure it is properly formatted.

--- On Tue, 8/30/11, Peng, Tao <> wrote:

From: Peng, Tao <>
Subject: [galaxy-user] annotation file for cufflinks
To: "Jennifer Jackson" <>, "galaxy-user" <>
Date: Tuesday, August 30, 2011, 1:52 PM

Hi jen and galaxy users, when I try to use cufflinks in GALAXY and select "use reference annotation", I am NOT sure how to get the annotation file in GTF format for cufflinks.

I was trying to down-load the annotation file from Illumina donated package in Cufflink website, I am NOT sure this is the right way to go for?



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