Hi Lanelle,

My initial guess is that the datatype is not set as "pileup" for your dataset - a standard, 6 column pileup format dataset. Perhaps you used the option to generate a "consensus pileup" with 10 columns? And so the output is labeled as tabular format? If so, you can cut the first 3 columns and last 3 columns out, paste them together, and assign the format "pileup" to use with the downstream filter tool. Tools to do the Cut/Paste are in the group 'Text Manipulation'.

If the datatype does not explain the issue, please let us know and we can look into this more. From a quick test I didn't find anything unusual, but of course we would want to track down any potential bugs,

Best,

Jen
Galaxy team

On 12/5/12 7:34 AM, Lanelle Oni Edwards wrote:

Hello,
I am currently using galaxy main to run a filter pileup on datasets that used the generate pileup tool. The filter pileup function is not recognizing any of my generate pileup datasets in the drop-down box so I cannot even execute the job. I think there may be a problem with this tool. I would greatly appreciate any help or an update as to when this tool will be functioning again.

Thank You,
Lanelle Edwards
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

-- 
Jennifer Jackson
http://galaxyproject.org