25 Sep
2013
25 Sep
'13
3:11 a.m.
Hi all, I am analyzing some targeted resequencing data. I was trying to use Variant Annotation tool under GATK after got .VCF file. But some error as following returned. Would you please help me to figure out what happened? Or this tool can only be used for some model organisms? Thanks a lot! "An error occurred with this dataset: Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/space/g2main [Wed Sep 25 03:59:41 EDT 2013] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/space/g2main/tmp-gatk-4SDjhY/gatk_input.fasta OUTPUT=/space/g2main/tmp-gatk-4SDjhY/dict5123971853428830433.tmp" Yan