Jen,
Thank
you very much for the information. They are very
informative.
I
found the htgs and wgs databases information there. What
does nt 28-Jan-2013 stand for?
Meantime,
if I am looking for virus containing database, I found wgs
is one. Can anyone confirm or advice further if there is
other options (database)?
Thank
you again!
Kathryn
Hi Kathryn,
These first three are three different types of sequence
databases available from GenBank The last is a genome
assembly for the phiX174 genome.
Information about all can be found here:
http://www.ncbi.nlm.nih.gov/genbank/
There are many uses, one example is covered in our
Metagenomics publication:
https://main.g2.bx.psu.edu/u/aun1/p/windshield-splatter
Thanks!
Jen
Galaxy team
On 5/24/13 6:59 AM, Sun, Wenping [USA]
wrote:
Dear galaxy
members,
I have a
question on the databases used in megablast module from
galaxy. There are four db options to blast against with -
1.
htgs
28-Jan-2013
2.
nt
28-Jan-2013
3.
wgs
28-Jan-2013
4.
phiX174
Is there any
further information to guide which database would be
appropriate to use? In addition, how to find the genome
information contained in each database?
Many thanks,
Kathryn
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