20 Jul
2009
20 Jul
'09
4:32 a.m.
2009/7/18 Rasmus Ory Nielsen <Rasmus.Nielsen@agrsci.dk>:
Hi Galaxy Team,
I've found that fasta_to_tabular.py is very slow with big sequences, e.g. ~4 minutes for a single 5MB sequence.
The patch below makes the running time go from minutes to seconds for such a sequence. Mind you, this is my first line of python, so there may be a smarter way.
I sent similar patches through months ago - they got ignored by the core team, unfortunately. cheers, James