Hello,

The input quality score type should be set as "Sanger" for your data.

Thanks!

Jen
Galaxy team

On 2/29/12 7:39 AM, Ateequr Rehman wrote:
> Dear Glaxy users and admin
>
> I ran my sequence data on FASTQC tool,
> output says it is
> Encoding Sanger / Illumina 1.9
>
> now i want to groom my file, but groomer does not have option for 1.9 in
> "Input FASTQ quality scores type"
>
> any idea which option i should select to grroom my file,
>
> later i want to run Bowtie or Tophat,
>
> Thanks
> **
>
>
>
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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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use the Galaxy Development list:

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