31 Oct
2008
31 Oct
'08
9:28 a.m.
Nate Coraor wrote:
Henrikki Almusa wrote:
Ok, I changed the tool id to EMBdreg27 and now it tried to send it to cluster. But alas that didn't go very far as error was thrown and I got this in the logs.
The URL is missing a / - there's an optional 'queue' parameter:
sge://[cell]/[queue]
To use the default queue on the default cell, use:
sge:///
Thanks, that worked. Now I still have one more question :). Is there any way to add enviromental variables to the command that the galaxy executes in the SGE cluster? I managed to do it by editing the script template in lib/galaxy/jobs/runners/sge.py However that would be a bit of a hack. Regards, -- Henrikki Almusa