Hi,
I am new to Galaxy
and am wondering what tools are available for annotation of SNPs?
I know that snpEff
is implemented in Galaxy and this enables annotation such as location and
predicted effect, however I am wondering if there are any automated means of
annotating a polymorphism as known/novel or determining its frequency in the
population.
Does Galaxy offer
anything like this or would it be necessary to create scripts that would for
exampole compare to dbSNP for uniqueness and the 1000 genomes project for
frequency.
Best,
Gavin
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