Hi Uma,

If you look under 'NGS Mapping' there is 'Map with Bowtie for SOLiD' and 'Map with BWA for SOLiD'
They take fastq, but you can use 'NGS: QC and manipulation' > 'Convert' to generate a fastq file from fastqc and qual files.  Or at least you could for SOLiD4 files.

Ian



From: galaxy-user-bounces@lists.bx.psu.edu [galaxy-user-bounces@lists.bx.psu.edu] on behalf of Chandran, Uma [chandranur@upmc.edu]
Sent: 11 March 2014 13:14
To: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files as input?

 

Thanks

Uma Chandran