Try this:

(1) Convert from BAM to SAM;
(2) Convert from SAM to inverval;
(3) Cut columns as needed to create a BED file.

Good luck,

On Dec 27, 2011, at 11:37 AM, Giuseppe Petrosino wrote:

Dear all,

I downloaded a file in .BAM format and want to transform it into .BED format. What can I do on Galaxy? Thanks a lot!


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