Hi Xiaogeng,

Your genome can be loaded in .fasta format into a dataset and used as a custom reference genome. Annotation files can also be loaded as a dataset. Once loaded, both will then be available to use with tools, along with your loaded sequence data.

Help with loading:
http://wiki.galaxyproject.org/Support#Trouble_loading_data

Help for Custom Genomes:
http://wiki.galaxyproject.org/Support#Custom_reference_genome

Best,

Jen
Galaxy team

On 3/25/13 7:31 PM, xiaogeng Feng wrote:

Hi,

I am using Galaxy to analyze Chlamydia trachomatis F/SW4 illumina sequence. We could not find this genome in your dataset list. Is there a way to import Chlamydia trachomatis F/SW4 sequence to Galaxy? how about the annotation file?

Many thanks,

Xiaogeng
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

-- 
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org