Sachit

On Fri, Oct 5, 2012 at 8:55 PM, Victor <ruotti@wisc.edu> wrote:

Hi Alicia,
At the moment you have to install the wrapper manually. That is, the current version of the RSEM won't automatically install the rsem binaries for you. We are working on updating the tool from the tool shed. The readme file within the tarball provides instructions on what version of RSEM to install and other details. We ll keep you posted as soon as we update the tool so things will be done for you much like the other newer tools in the tool shed.
Thank you for using RSEM and please let me know how it goes.

Victor

On Oct 5, 2012, at 7:14 PM, Ross <ross.lazarus@gmail.com> wrote:

> Alicia,
>
> Some relevant details usually make it easier for list members to help
> you - please see
> http://wiki.g2.bx.psu.edu/Support#Public_mailing_list_Q_.26_A_discussions
>
> Did you load the offending tool from a toolshed or is it a tool
> wrapper you wrote yourself? If the latter, I have two suggestions:
>
> 1) Search paster.log for your tool name and make sure it got correctly
> loaded when you restarted Galaxy - xml syntax errors like misplaced <
> characters will break the tool loading process.
>
> 2) if the log shows that it loaded, make sure you refresh the tool
> frame in your browser after restarting Galaxy - eg clicking the
> "analyse data" tab will get rid of the old cached copy.
>
>
> On Sat, Oct 6, 2012 at 10:02 AM, Alicia R. Pérez-Porro
> <alicia.r.perezporro@gmail.com> wrote:
>> Hi all,
>>
>> Recently i installed RSEM into Galaxy.
>> The problem is that now i cannot find the tool when i open "my" galaxy in my
>> computer. I checked and rsem folder is inside the tool folder.
>> Any suggestions?
>>
>> Thanks,
>> Alicia.
>>
>>
>>
>>
>>
>> --
>> Alicia R. Pérez-Porro
>> PhD student
>>
>> Giribet lab
>> Department of Organismic and Evolutionary Biology
>> MCZ labs
>> Harvard University
>> 26 Oxford St, Cambridge MA 02138
>> phone: +1 617-496-5308
>> fax: +1 617-495-5667
>> www.oeb.harvard.edu/faculty/giribet/
>>
>> Department of Marine Ecology
>> Center for Advanced Studies of Blanes (CEAB-CSIC)
>> C/Accés Cala St. Francesc 14
>> 17300 Blanes, Girona, SPAIN
>> phone: +34 972 336 101
>> fax: +34 972 337 806
>> www.ceab.csic.es
>>
>>
>> ___________________________________________________________
>> The Galaxy User list should be used for the discussion of
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>>
>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
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>
>
>
> --
> Ross Lazarus MBBS MPH;
> Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444
> http://scholar.google.com/citations?hl=en&user=UCUuEM4AAAAJ
>
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
> http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
> http://lists.bx.psu.edu/

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

http://lists.bx.psu.edu/