Good Evening Jose: Please note the types of graphing formats you can display at UCSC: http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format I would recommend converting your bedgraph file to a bigWig file and display that via a remote URL. This would be your most efficient mechanism of display. --Hiram ----- Original Message ----- From: "Xianrong Wong" <wongxr@gmail.com> To: "James Robinson" <jrobinso@broadinstitute.org> Cc: galaxy-user@lists.bx.psu.edu Sent: Thursday, May 10, 2012 9:27:07 PM Subject: Re: [galaxy-user] Displaying bed files in ucsc I changed it to bedgraph and can no longer view in UCSC (the button to view in UCSC was not there anymore). I had it in bed format subsequently and put in a header. I was looking at the bedgraph/wiggle header documentation on UCSC but don't find any that describes displaying scores in histogram format. I saw that we can change colour the intensity of the bars based on scores though. Jose On Thu, May 10, 2012 at 10:27 PM, James Robinson < jrobinso@broadinstitute.org > wrote: Hi Jose, What you have described is a "bedgraph" file. Perhaps changing the file extension to "bedgraph" will be enough, if not you might be required to enter a track line. See UCSC for details. On Thu, May 10, 2012 at 9:04 PM, Xianrong Wong < wongxr@gmail.com > wrote: Hello, I have a bed file in this format: chr# start end scores. I tried to view it in ucsc main but it showed only where the fragments are(based on the start and end coordinates) with numerical scores beside each fragment. How do I view the file as a histogram format? What format will I need to convert the file to and where can I do the conversion? Any advise is greatly appreciated! Jose