Hello Galaxy community,<div><br></div><div>I would like to know if there is any available tool in Galaxy for automated gene annotation. I need gene annotation in GTF or GFF3 format to run CuffDiff on a RNA-Seq project that we are.</div>
<div>If not, do you recommend me any software or utility. We have the genome annotated in GenBank format, but searching in the web I&#39;ve seen that is not possible to convert GenBank format to GTF or GFF3.</div><div><br>
</div><div>I appreciate your opinions. </div><div>Thank you, Bernardo</div><div><div><br></div>-- <br><p><font color="#004d71" face="Arial, sans-serif"></font></p><p><font color="#004d71" face="Arial, sans-serif"><b>Bernardo Bello Ortí</b></font></p>
<p><font color="#004d71" face="Arial, sans-serif">Becario predoctoral FPI </font></p><p><font color="#004d71" face="Arial, sans-serif">CReSA-IRTA</font></p><p><font color="#004d71" face="Arial, sans-serif">Campus de Bellaterra-Universitat Autònoma de Barcelona</font></p>
<p><font color="#004d71" face="Arial, sans-serif">Edifici CReSA</font></p><p><font color="#004d71" face="Arial, sans-serif">08193  Bellaterra (Barcelona)</font></p><p><font color="#004d71" face="Arial, sans-serif">Tel.: 647 42 52 63 <b><a href="http://www.cresa.es" target="_blank">www.cresa.es</a>  </b></font></p>
<p><font color="#004d71" face="Arial, sans-serif"><b><img src="http://www.cresa.es/cresa3/imagenes/bannernew/cresalogoR.jpg"><br></b></font></p><p><span lang="CA" style="font-size:8pt;font-family:Arial,sans-serif;color:rgb(0,77,113);background-image:initial;background-color:white;background-repeat:initial initial"><br>
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