I second that, I just ran my first run of Groomer today and I would have cancelled the top for taking too long if I didn’t know the CPU was busy.

 -John



On 2/24/11 11:24 AM, "Johnson, Kory (NIH/NINDS) [C]" <johnsonko@ninds.nih.gov> wrote:

Hello,
 
Do you have a chart or table that projects time for Groomer to complete vs number of reads provided?
 
Have submitted job totaling 25M Illumina reads in FASTQ v1.3+ format and it is taking time on the order of days.
 
What would be helpful, if not on the development schedule is a progress bar or % completed reported as text, anything to give indication that the job submitted is processing correctly, not hung, and it can be estimated how long it will take.
 
Thank you,
 
Kory Johnson
 
--------------------------------------------
 
Kory R. Johnson, MS, PhD
Sr. Bioinformatics Scientist
 

 
www.kellygovernmentsolutions.com
 
Providing Contract Services For:
 
Bioinformatics Section,
Information Technology & Bioinformatics Program,
Division of Intramural Research (DIR),
National Institute of Neurological Disorders & Stroke (NINDS),
National Institutes of Health (NIH),
Bethesda, Maryland
 
Mailing Address:
 
NINDS/NIH
Clinical Center (Building 10)
Office 5S223
9000 Rockville Pike
Bethesda, MD 20892
 
Contact Information:
 
Phone:    301-402-1956
Fax:           301-480-3563
email:      johnsonko@ninds.nih.gov

P Green Message:
 
Please consider the environment before printing this e-mail.  Thank you.

Important Message:
 
This electronic message transmission contains information intended for the recipient only.  Such that, the information contained herein may be confidential, privaledged, or proprietary. If you are not the intended recipient, be aware that any disclosure, copying, distribution, or use of this information is strictly prohibited.  If you have received this electronic information in error, please notify the sender immediately by telephone.  Thank you.

--------------------------------------------