Hello,
I'm facing an issue with "Depth Of Coverage" tool when it runs on refGene and target BED file. The error message is:
File "cheetah_DynamicallyCompiledCheetahTemplate_1330588825_26_16118.py", line 402, in respond
NotFound: cannot find 'omit_interval_statistics' while searching for 'gatk_param_type.omit_interval_statistics'
I noticed that the issue is only when the "Advanced GATK options" is enabled to set target BED file.
The commandline runs perfectly with the input files, but galaxy fails due to this error. Can anyone suggest what's the issue?
Best,
Raj
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