Hello Aaron,

The genome was obtained from Genbank:
http://www.ncbi.nlm.nih.gov/genome/10
http://www.ncbi.nlm.nih.gov/assembly/313038/

Download links can be found at the International Rice Genome Sequencing Project (IRGSP), but, we source from NCBI directly whenever possible.
http://rgp.dna.affrc.go.jp/E/IRGSP/index.html
http://rgp.dna.affrc.go.jp/E/IRGSP/Build4/build4.html

These resources may also be helpful in general:
http://www.gramene.org/resources/
http://plants.ensembl.org/Oryza_sativa/Info/Index
http://rice.genomics.org.cn/rice/link/link.jsp

Best,

Jen
Galaxy team

ps. Going forward, please use the mailing list, galaxy-user@bx.psu.edu, for new questions to help us out with tracking. Thanks!

On 12/13/12 9:11 AM, Aaron P Smith wrote:

Hi Jen,

I’m trying to obtain the coordinates for the rice genome used in Galaxy to compare some sequences from another source. Can you direct me to the version of the genome used in Galaxy (oryza_sativa_japonica_nipponbare_IRGSP4.0)?

Thanks!

Aaron

-- 
Jennifer Jackson
http://galaxyproject.org