There is also now RScript http://stat.ethz.ch/R-manual/R-devel/library/utils/html/Rscript.html since R distro before that there was littelr too http://code.google.com/p/littler/ Malcolm Cook Stowers Institute for Medical Research - Bioinformatics Kansas City, Missouri USA -----Original Message----- From: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of James Taylor Sent: Tuesday, September 21, 2010 6:06 AM To: Bree, Freddy de Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] running R in Galaxy On Sep 21, 2010, at 5:30 AM, Bree, Freddy de wrote:
1. Running it as "R" is a hassle, because Galaxy cannot deal with source and input file and output file using "--args" and "<" (< in xml) and ">" (> in xml).
We use a small shell script called r_wrapper.sh which is included in the distribution. _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user