IGV should allow you to do this but not sure about trackbrowser in Galaxy. Vasu --- On Wed, 8/3/11, Jiannong Xu <jxu@nmsu.edu> wrote: From: Jiannong Xu <jxu@nmsu.edu> Subject: [galaxy-user] visualization To: "galaxy-user@lists.bx.psu.edu" <galaxy-user@lists.bx.psu.edu> Date: Wednesday, August 3, 2011, 6:03 PM Hi Jen, I mapped illumine reads to draft genomic contigs, and try to visualize the mapping. Is there any way I can use my own reference contigs for visualization? Thanks John Xu NMSU ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/