hi,
First thanks for offering Galaxy. It's really a great idea, to
develop/share the tools together.
I am a bioinformatian, but also a newbie in configuring the
web-application stuff. Could you educate me for the following questions?
1. How can I set up galaxy on our lab server (say,
http://www.myserver.edu/galaxy)?
Currently, I just downloaded/installed galaxy on /opt/www/galaxy on the
server, and then simply change the port and host IP in the
universe_wsgi.ini file:
port = 8888
host = 123.456.789.101 # the IP of our server
Then I run "nohup sh run.sh &" on the terminal. Till now, I can
open the galaxy page via http://www.myserver.edu:8888
But, it's still not the address I want, http://www.myserver.edu/galaxy.
How to set it to /galaxy, instead of port number? Where should I
configure it? Thanks
2. How to set the data(databases) it needed?
For example, in the "Get ENCODE Data" menu, when I click the sub-menu,
it's empty, with no ENCODE data list as your Galaxy site listed.
How/Where can I get it and set it in my local server?
Also, the tool like liftover is empty, "The To list
will be empty if we don't carry any liftover mappings corresponding to
the genome build of the input dataset.", how can I set this?
I might check the maillist first to search answers for the above
questions. Thanks very much if you can point out where the help page is.
Thanks
Xianjun