Re: [galaxy-user] Launching IGB from Galaxy

Hi Seth, First, make sure IGB is open first, then click on the "Local" link. If your genome is not included, there is custom genome support, see the help under the "IGB User Guide" in the application's top menu link. Hopefully this helps, Jen Galaxy team On 7/21/13 5:23 PM, Seth Stern wrote:

Hi,

Ive been trying to launch the IGB viewer by clicking the Local button on the SAM-to-BAM converter (in History). (I have a local version of the viewer running on my computer.) But instead of transferring data to the viewer (what I expected to happen), it launches the web browser with this address:

http://localhost:7085/UnibrowControl?version=?&feature_url_0=http://main.g2.bx.psu.edu/display_application/bbd44e69cb8906b5ec213d3ada68caac/igb_bam/Local/1ce2985e52430eb3/data/SAM_to_BAM_on_data_10_and_data_20__converted_BAM_bbd44e69cb8906b5ec213d3ada68caac.bam&sym_name_0=SAM_to_BAM_on_data_10_and_data_20__converted_BAM&sym_method_0=http://main.g2.bx.psu.edu/display_application/bbd44e69cb8906b5ec213d3ada68caac/igb_bam/Local/1ce2985e52430eb3/data/SAM_to_BAM_on_data_10_and_data_20__converted_BAM_bbd44e69cb8906b5ec213d3ada68caac.bam&query_url=http://main.g2.bx.psu.edu/display_application/bbd44e69cb8906b5ec213d3ada68caac/igb_bam/Local/1ce2985e52430eb3/data/SAM_to_BAM_on_data_10_and_data_20__converted_BAM_bbd44e69cb8906b5ec213d3ada68caac.bam&server_url=galaxy

Can anyone help me understand what is going on ?

Thanks,

Seth

*Seth Stern, Ph.D.*

*sethster@comcast.net*

*650 996 8726 (cell)*

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