I have a VCF file and I want to filter it for
nonsynonymous/ deletion/ insertion seq variations. Once I
filter this file and compare between tumor vs normal samples and
then annotate such variations. I believe I can filter this file
using SnpSift and then can annotate with SnpEff, When I try to
use Snsift filter it just says arbitrary expression. Are there
rules how to use expression for a particular filter with in
galaxy. If any one has used SnpSift in galaxy may share their
expertise.
Thanks
Kanwar
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