Thanks, Nate! I think this would be a very useful resource. Yury On 04/04/11, Nate Coraor wrote:
Yury Bukhman wrote:
Hi,
we have set up a Galaxy server for internal use. We would like to provide indexes for NGS mapping tools for a set of organisms that are relevant to our research. While bowtie has a repository of such indexes, other tools, e.g. bwa, don't seem to have one, so we have to build our own. Is there a repository of pre-built indexes for all mapping tools supported by Galaxy somewhere?
Hi Yury,
We are working on setting up a mirror of all of our reference data that will be accessible via rsync and possibly http. There'll be an announcement when this is available.
--nate
Thanks.
Yury
-- Yury V. Bukhman, Ph.D. Associate Scientist, Bioinformatics Great Lakes Bioenergy Research Center University of Wisconsin - Madison 445 Henry Mall, Rm. 513 Madison, WI 53706, USA Phone: 608-890-2680 Fax: 608-890-2427 Email: ybukhman@glbrc.wisc.edu
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-- Yury V. Bukhman, Ph.D. Associate Scientist, Bioinformatics Great Lakes Bioenergy Research Center University of Wisconsin - Madison 445 Henry Mall, Rm. 513 Madison, WI 53706, USA Phone: 608-890-2680 Fax: 608-890-2427 Email: ybukhman@glbrc.wisc.edu