Dear all,
I’m analysing SNPs data for the first time. I tried with the few software I found in litterature but they can only manage small datasets. I am currently trying with “genetics” package in R but the Geno function takes into account a marker at a time. Considering I have to analyse 200 samples with 50K markers is there any way to tell R to analyse each SNP one after the other?
 
Thank you very much for the help.
 
Laura