Hello again, A Composite Datatype loaded into a history can be an input into a workflow in your instance: https://bitbucket.org/galaxy/galaxy-central/wiki/CompositeDatatypes Hopefully this helps! Thanks, Jen On 11/3/10 2:09 AM, Jean-François Dufayard wrote:
Hello Jennifer,
Thanks a lot for you quick answer.
We've already configured our Galaxy server, on an SGE cluster. There is still work to do if I read well your wiki.
But, sorry, I'm not sure to understand well your answer: - So, there is actually no simple solution to run a pipeline on multiple datasets (for example the whole contain of a directory) ? - You suggest us to developpe a specific interface to do so ?
Best regards,
2010/11/2 Jennifer Jackson <jen@bx.psu.edu <mailto:jen@bx.psu.edu>>
Hello Jean-Francois,
The Galaxy wiki describing production set up should help you to develop a solution, but please let us know if you need more help.
General: http://bitbucket.org/galaxy/galaxy-central/wiki/Home -> For tool developers and labs
Specific: http://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer
Best!
Jen Galaxy team
On 11/2/10 1:39 AM, Jean-François Dufayard wrote:
Dear Galaxy users,
I would like to do a quite simple operation, in theory: I've configured a Galaxy pipeline on a local Galaxy server (installed in a Sun Grid Engine cluster), and I would like to run it on several datasets (several thousands, in a directory) and get result files in another directory.
With the web interface, using libraries or not, I didn't found any solution.
Does a simple solution exist ? Or anybody have experienced the same problem ?
Sincerely yours, -- Jean-François Dufayard Research engineer - ARCAD project CIRAD - Montpellier - France
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-- Jennifer Jackson http://usegalaxy.org
-- Jean-François Dufayard Research engineer - ARCAD project CIRAD - Montpellier - France
-- Jennifer Jackson http://usegalaxy.org