I found Galaxy extremely helpful in the past months and I have an issue that could again be solved using your wonderful platform.
I am playing with a bunch of sequences (genome coordinates) from the human genomes that I obtained from some blast searches.
I would like to see if these exact sequences are shared by (in synteny with) chimp, orang and macaque.
I got MAF blocks from Galaxy and played with them, but I don't see an easy solution.
It would be great if you have some suggestion about how to work with synteny using Galaxy, if possible.
Thanks a lot!
Postdoctoral fellow, Hahn Lab
Department of Biology
1001 East Third Street
Bloomington, IN 47405-3700